I don't think you understood the article.
>So Karoff's thinking goes like this. More coronal mass ejections in Earth's past lead to fewer cosmic rays hitting Earth which lead to less cloud cover. Less cloud cover meant that less sunlight would have been reflected back into space which would have allowed the surface to heat up.
Now go through and switch out more/less in the paragraph and you get this:
Less coronal mass ejections in Earth's present lead to more cosmic rays hitting Earth which lead to more cloud cover. More cloud cover means that more sunlight would be reflected back into space, allowing the surface to cool down. Which isn't happening.
This article is simply meant to provide one possible explanation for Sagan's Young Sun paradox, not an explanation for climate change.
Edit: Also, the study was conducted by the University of Birmingham and the theory proposed by one of the graduate students there. It wasn't even published in a scientific journal, only on MIT's school newspaper's blog.
Never attribute to malice that which is adequately explained by stupidity.